CVE-2026-2705: Open Babel NULL pointer dereference in MOL2 OBAtom::SetFormalCharge

CVE-2026-2705 · Severity: medium · CVSS 5.5 · Published 2026-06-30

Open Babel is a software library used to process and convert chemistry data files. A vulnerability in its file parser allows a specially crafted chemistry file to crash the application. This could lead to a service outage or application failure if a user or automated system attempts to process a malicious file.

Technologies: openbabel (PyPI). Vendors: PyPI.

Quick answers

Is CVE-2026-2705 exploited in the wild?
No. Junglewise Threat Intelligence has no report of CVE-2026-2705 being exploited in the wild.
How severe is CVE-2026-2705?
Medium severity, with a CVSS score of 5.5, published 30 June 2026.
Which products and versions are affected?
openbabel (PyPI) < 3.2.0, ECOSYSTEM:introduced=0,fixed=3.2.0.
Is there a fix for CVE-2026-2705?
Yes. openbabel (PyPI): upgrade to 3.2.0 or later. Junglewise finds every place you run it, drafts the upgrade and applies it once you approve.
How is CVE-2026-2705 attacked?
It is attacked with local access, in a software library.
Am I affected by CVE-2026-2705?
Check whether you run openbabel (PyPI) at an affected version. Junglewise does that check for you around the clock: connect your code, cloud and domains, and it matches new vulnerabilities like this one against what you actually run and tells you when one reaches you.

How to fix

  • openbabel (PyPI): upgrade to 3.2.0 or later
    pip install "openbabel>=3.2.0"

Technical details

A memory-safety vulnerability exists in Open Babel's MOL2 file format parser due to a NULL pointer dereference in the `OBAtom::SetFormalCharge` function. The flaw is triggered when the parser encounters a malformed atom record in a MOL2 file, causing it to call the method on a NULL atom pointer. An attacker can exploit this by providing a crafted MOL2 file to the `obabel` CLI tool, the `OBConversion` API, or any of its language bindings (Python, Java, etc.). This results in a denial-of-service (application crash). The issue is fixed in version 3.2.0.

Affected products

  • Open Babel openbabel <= 3.1.1

Identifiers

  • CVE-2026-2705
  • GHSA-4w5w-4fhm-q483
  • PYSEC-2026-2770

Timeline

  • 2026-05-26: patched: Version 3.2.0 released
  • 2026-06-30: advisory: GitHub Advisory published

References

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